Publications

330 Papers

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Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes.

Li Y, Wang W, Feng Y, Tu M, Wittich PE, Bate NJ, Messing J

Published: 28 July 2018 in Plant biotechnology journal
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Pubmed ID: 30051585
DOI: 10.1111/pbi.12991

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Genome-Wide Association Studies for Five Forage Quality-Related Traits in Sorghum (Sorghum bicolor L.).

Li J, Tang W, Zhang YW, Chen KN, Wang C, Liu Y, Zhan Q, Wang C, Wang SB, Xie SQ, Wang L

Published: 18 July 2018 in Frontiers in plant science
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Pubmed ID: 30186292
DOI: 10.3389/fpls.2018.01146

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Field-based high-throughput phenotyping of plant height in sorghum using different sensing technologies.

Wang X, Singh D, Marla S, Morris G, Poland J

Published: 13 July 2018 in Plant methods
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Pubmed ID: 29997682
DOI: 10.1186/s13007-018-0324-5

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Engineering linear, branched-chain triterpene metabolism in monocots.

Kempinski C, Jiang Z, Zinck G, Sato SJ, Ge Z, Clemente TE, Chappell J

Published: 7 July 2018 in Plant biotechnology journal
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Pubmed ID: 29979490
DOI: 10.1111/pbi.12983

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A new high-throughput assay for determining soluble sugar in sorghum internode-extracted juice.

Li Y, Mehta R, Messing J

Published: 28 June 2018 in Planta
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Pubmed ID: 29948129
DOI: 10.1007/s00425-018-2932-8

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High-Polyphenol Sorghum Bran Extract Inhibits Cancer Cell Growth Through ROS Induction, Cell Cycle Arrest, and Apoptosis.

Smolensky D, Rhodes D, McVey DS, Fawver Z, Perumal R, Herald T, Noronha L

Published: 8 May 2018 in Journal of medicinal food
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Pubmed ID: 29733262
DOI: 10.1089/jmf.2018.0008

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Population genomics of sorghum (Sorghum bicolor) across diverse agroclimatic zones of Niger.

Maina F, Bouchet S, Marla SR, Hu Z, Wang J, Mamadou A, Abdou M, Saïdou AA, Morris GP

Published: 13 February 2018 in Genome
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Pubmed ID: 29432699
DOI: 10.1139/gen-2017-0131

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Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations.

Parra-Londono S, Kavka M, Samans B, Snowdon R, Wieckhorst S, Uptmoor R

Published: 12 February 2018 in Annals of botany
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Pubmed ID: 29351588
DOI: 10.1093/aob/mcx157

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Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum.

Addo-Quaye C, Tuinstra M, Carraro N, Weil C, Dilkes BP

Published: 31 January 2018 in G3 (Bethesda, Md.)
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Pubmed ID: 29378822
DOI: 10.1534/g3.117.300301

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Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations.

Parra-Londono S, Kavka M, Samans B, Snowdon R, Wieckhorst S, Uptmoor R

Published: 20 January 2018 in Annals of botany
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Pubmed ID: 29351588
DOI: 10.1093/aob/mcx157

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Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions.

Ortiz D, Hu J, Salas Fernandez MG

Published: 6 October 2017 in Journal of experimental botany
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Pubmed ID: 28981780
DOI: 10.1093/jxb/erx276

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Development of a phenotyping platform for high throughput screening of nodal root angle in sorghum.

Joshi DC, Singh V, Hunt C, Mace E, van Oosterom E, Sulman R, Jordan D, Hammer G

Published: 14 July 2017 in Plant methods
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Pubmed ID: 28702072
DOI: 10.1186/s13007-017-0206-2

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Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum.

Gelli M, Konda AR, Liu K, Zhang C, Clemente TE, Holding DR, Dweikat IM

Published: 13 July 2017 in BMC plant biology
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Pubmed ID: 28697783
DOI: 10.1186/s12870-017-1064-9

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Dynamics of gene expression during development and expansion of vegetative stem internodes of bioenergy sorghum.

Kebrom TH, McKinley B, Mullet JE

Published: 27 June 2017 in Biotechnology for biofuels
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Pubmed ID: 28649278
DOI: 10.1186/s13068-017-0848-3

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Mutation in sorghum LOW GERMINATION STIMULANT 1 alters strigolactones and causes Striga resistance.

Gobena D, Shimels M, Rich PJ, Ruyter-Spira C, Bouwmeester H, Kanuganti S, Mengiste T, Ejeta G

Published: 25 April 2017 in Proceedings of the National Academy of Sciences of the United States of America
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Pubmed ID: 28396420
DOI: 10.1073/pnas.1618965114

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Expression of the Maize Dof1 Transcription Factor in Wheat and Sorghum.

Peña PA, Quach T, Sato S, Ge Z, Nersesian N, Changa T, Dweikat I, Soundararajan M, Clemente TE

Published: 21 April 2017 in Frontiers in plant science
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Pubmed ID: 28424717
DOI: 10.3389/fpls.2017.00434

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Salmon provides fast and bias-aware quantification of transcript expression.

Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C

Published: 7 March 2017 in Nature methods
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Pubmed ID: 28699261
DOI: 10.1038/nmeth.4197

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Genetic architecture of kernel composition in global sorghum germplasm.

Rhodes DH, Hoffmann L, Rooney WL, Herald TJ, Bean S, Boyles R, Brenton ZW, Kresovich S

Published: 7 January 2017 in BMC genomics
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Pubmed ID: 28056770
DOI: 10.1186/s12864-016-3403-x

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Forward Genetics by Sequencing EMS Variation-Induced Inbred Lines.

Addo-Quaye C, Buescher E, Best N, Chaikam V, Baxter I, Dilkes BP

Published: 4 January 2017 in G3 (Bethesda, Md.)
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Pubmed ID: 28040779
DOI: 10.1534/g3.116.029660

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Using Genotyping by Sequencing to Map Two Novel Anthracnose Resistance Loci in Sorghum bicolor.

J Felderhoff T, M McIntyre L, Saballos A, Vermerris W

Published: 7 July 2016 in G3 (Bethesda, Md.)
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Pubmed ID: 27194807
DOI: 10.1534/g3.116.030510

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Association mapping of germinability and seedling vigor in sorghum under controlled low-temperature conditions.

Upadhyaya HD, Wang YH, Sastry DV, Dwivedi SL, Prasad PV, Burrell AM, Klein RR, Morris GP, Klein PE

Published: 14 January 2016 in Genome
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Pubmed ID: 26758024
DOI: 10.1139/gen-2015-0122

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Transcriptomic analysis comparing stay-green and senescent Sorghum bicolor lines identifies a role for proline biosynthesis in the stay-green trait.

Johnson SM, Cummins I, Lim FL, Slabas AR, Knight MR

Published: 1 September 2015 in Journal of experimental botany
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Pubmed ID: 26320239
DOI: 10.1093/jxb/erv405

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Identification of novel drought-responsive microRNAs and trans-acting siRNAs from Sorghum bicolor (L.) Moench by high-throughput sequencing analysis.

Katiyar A, Smita S, Muthusamy SK, Chinnusamy V, Pandey DM, Bansal KC

Published: 4 August 2015 in Frontiers in plant science
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Pubmed ID: 26236318
DOI: 10.3389/fpls.2015.00506

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Tobacco drought stress responses reveal new targets for Solanaceae crop improvement.

Rabara RC, Tripathi P, Reese RN, Rushton DL, Alexander D, Timko MP, Shen QJ, Rushton PJ

Published: 1 July 2015 in BMC genomics
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Pubmed ID: 26123791
DOI: 10.1186/s12864-015-1575-4

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Inheritance and molecular mapping of Rf6 locus with pollen fertility restoration ability on A1 and A2 cytoplasms in sorghum.

Praveen M, Anurag Uttam G, Suneetha N, Umakanth A, Patil JV, Madhusudhana R

Published: 30 May 2015 in Plant science : an international journal of experimental plant biology
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Pubmed ID: 26259176
DOI: 10.1016/j.plantsci.2015.05.020

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Genome-Wide Association Study on Resistance to Stalk Rot Diseases in Grain Sorghum.

Adeyanju A, Little C, Yu J, Tesso T

Published: 16 April 2015 in G3 (Bethesda, Md.)
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Pubmed ID: 25882062
DOI: 10.1534/g3.114.016394

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MOROKOSHI: transcriptome database in Sorghum bicolor.

Makita Y, Shimada S, Kawashima M, Kondou-Kuriyama T, Toyoda T, Matsui M

Published: 17 December 2014 in Plant & cell physiology
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Pubmed ID: 25505007
DOI: 10.1093/pcp/pcu187

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Arabidopsis drought-induced protein Di19-3 participates in plant response to drought and high salinity stresses.

Qin LX, Li Y, Li DD, Xu WL, Zheng Y, Li XB

Published: 15 September 2014 in Plant molecular biology
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Pubmed ID: 25516281
DOI: 10.1007/s11103-014-0251-4

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Molecular mapping of the brace root traits in sorghum (Sorghum bicolor L. Moench).

Li R, Han Y, Lv P, Du R, Liu G

Published: 16 February 2014 in Breeding science
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Pubmed ID: 24987306
DOI: 10.1270/jsbbs.64.193

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Molecular mapping of genomic regions harbouring QTLs for root and yield traits in sorghum (Sorghum bicolor L. Moench).

Fakrudin B, Kavil SP, Girma Y, Arun SS, Dadakhalandar D, Gurusiddesh BH, Patil AM, Thudi M, Bhairappanavar SB, Narayana YD, Krishnaraj PU, Khadi BM, Kamatar MY

Published: 17 January 2014 in Physiology and molecular biology of plants : an international journal of functional plant biology
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Pubmed ID: 24431509
DOI: 10.1007/s12298-013-0188-0

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