A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses.
Laosuntisuk K, Vennapusa A, Somayanda IM, Leman AR, Jagadish SK, Doherty CJ
Published: 30 January 2024
in The Plant journal : for cell and molecular biology
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Parallel tuning of semi-dwarfism via differential splicing of Brachytic1 in commercial maize and smallholder sorghum.
Jiao S, Mamidi S, Chamberlin MA, Beatty M, Thatcher S, Simcox KD, Maina F, Wang-Nan H, Johal GS, Heetland L, Marla SR, Meeley RB, Schmutz J, Morris GP, Multani DS
Published: 22 September 2023
in The New phytologist
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Unraveling transcriptomics of sorghum grain carotenoids: a step forward for biofortification.
Cruet-Burgos C, Rhodes DH
Published: 4 May 2023
in BMC genomics
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Regulation of dhurrin pathway gene expression during Sorghum bicolor development.
Gleadow RM, McKinley BA, Blomstedt CK, Lamb AC, Møller BL, Mullet JE
Published: 12 November 2021
in Planta
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Transcriptome sequencing analysis of sorghum callus with various regeneration capacities.
Zhou C, Wang S, Zhou H, Yuan Z, Zhou T, Zhang Y, Xiang S, Yang F, Shen X, Zhang D
Published: 22 July 2021
in Planta
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Identification of Candidate Forage Yield Genes in Sorghum (Sorghum bicolor L.) Using Integrated Genome-Wide Association Studies and RNA-Seq.
Wang L, Liu Y, Gao L, Yang X, Zhang X, Xie S, Chen M, Wang YH, Li J, Shen Y
Published: 29 January 2022
in Frontiers in plant science
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PlantNexus: A Gene Co-expression Network Database and Visualization Tool for Barley and Sorghum.
Zhou Y, Sukul A, Mishler-Elmore JW, Faik A, Held MA
Published: 14 January 2022
in Plant & cell physiology
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The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns.
Aono AH, Pimenta RJG, Garcia ALB, Correr FH, Hosaka GK, Carrasco MM, Cardoso-Silva CB, Mancini MC, Sforça DA, Dos Santos LB, Nagai JS, Pinto LR, Landell MGA, Carneiro MS, Balsalobre TW, Quiles MG, Pereira WA, Margarido GRA, de Souza AP
Published: 27 July 2021
in Frontiers in plant science
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Comparative Transcriptome Analysis Reveals Genetic Mechanisms of Sugarcane Aphid Resistance in Grain Sorghum.
Serba DD, Meng X, Schnable J, Bashir E, Michaud JP, Vara Prasad PV, Perumal R
Published: 21 July 2021
in International journal of molecular sciences
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Profiling Alternative 3′ Untranslated Regions in Sorghum using RNA-seq Data.
Tu M, Li Y
Published: 17 November 2020
in Frontiers in genetics
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Transcriptome analysis of drought-tolerant sorghum genotype SC56 in response to water stress reveals an oxidative stress defense strategy.
Azzouz-Olden F, Hunt AG, Dinkins R
Published: 19 April 2020
in Molecular biology reports
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Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.
Varoquaux N, Cole B, Gao C, Pierroz G, Baker CR, Patel D, Madera M, Jeffers T, Hollingsworth J, Sievert J, Yoshinaga Y, Owiti JA, Singan VR, DeGraaf S, Xu L, Blow MJ, Harrison MJ, Visel A, Jansson C, Niyogi KK, Hutmacher R, Coleman-Derr D, O'Malley RC, Taylor JW, Dahlberg J, Vogel JP, Lemaux PG, Purdom E
Published: 7 December 2019
in Proceedings of the National Academy of Sciences of the United States of America
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Common metabolic networks contribute to carbon sink strength of sorghum internodes: implications for bioenergy improvement.
Li Y, Tu M, Feng Y, Wang W, Messing J
Published: 14 December 2019
in Biotechnology for biofuels
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Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes.
Li Y, Wang W, Feng Y, Tu M, Wittich PE, Bate NJ, Messing J
Published: 28 July 2018
in Plant biotechnology journal
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Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE.
Fracasso A, Trindade LM, Amaducci S
Published: 23 May 2016
in BMC plant biology
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Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences.
Soneson C, Love MI, Robinson MD
Published: 1 March 2016
in F1000Research
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