16 Papers


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A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses.

Laosuntisuk K, Vennapusa A, Somayanda IM, Leman AR, Jagadish SK, Doherty CJ

Published: 30 January 2024 in The Plant journal : for cell and molecular biology
Pubmed ID: 38289828
DOI: 10.1111/tpj.16654


Parallel tuning of semi-dwarfism via differential splicing of Brachytic1 in commercial maize and smallholder sorghum.

Jiao S, Mamidi S, Chamberlin MA, Beatty M, Thatcher S, Simcox KD, Maina F, Wang-Nan H, Johal GS, Heetland L, Marla SR, Meeley RB, Schmutz J, Morris GP, Multani DS

Published: 22 September 2023 in The New phytologist
Pubmed ID: 37737036
DOI: 10.1111/nph.19273


Unraveling transcriptomics of sorghum grain carotenoids: a step forward for biofortification.

Cruet-Burgos C, Rhodes DH

Published: 4 May 2023 in BMC genomics
Pubmed ID: 37138226
DOI: 10.1186/s12864-023-09323-3


Regulation of dhurrin pathway gene expression during Sorghum bicolor development.

Gleadow RM, McKinley BA, Blomstedt CK, Lamb AC, Møller BL, Mullet JE

Published: 12 November 2021 in Planta
Pubmed ID: 34762174
DOI: 10.1007/s00425-021-03774-2


Transcriptome sequencing analysis of sorghum callus with various regeneration capacities.

Zhou C, Wang S, Zhou H, Yuan Z, Zhou T, Zhang Y, Xiang S, Yang F, Shen X, Zhang D

Published: 22 July 2021 in Planta
Pubmed ID: 34287698
DOI: 10.1007/s00425-021-03683-4


Identification of Candidate Forage Yield Genes in Sorghum (Sorghum bicolor L.) Using Integrated Genome-Wide Association Studies and RNA-Seq.

Wang L, Liu Y, Gao L, Yang X, Zhang X, Xie S, Chen M, Wang YH, Li J, Shen Y

Published: 29 January 2022 in Frontiers in plant science
Pubmed ID: 35087554
DOI: 10.3389/fpls.2021.788433


PlantNexus: A Gene Co-expression Network Database and Visualization Tool for Barley and Sorghum.

Zhou Y, Sukul A, Mishler-Elmore JW, Faik A, Held MA

Published: 14 January 2022 in Plant & cell physiology
Pubmed ID: 35024864
DOI: 10.1093/pcp/pcac007


The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns.

Aono AH, Pimenta RJG, Garcia ALB, Correr FH, Hosaka GK, Carrasco MM, Cardoso-Silva CB, Mancini MC, Sforça DA, Dos Santos LB, Nagai JS, Pinto LR, Landell MGA, Carneiro MS, Balsalobre TW, Quiles MG, Pereira WA, Margarido GRA, de Souza AP

Published: 27 July 2021 in Frontiers in plant science
Pubmed ID: 34305969
DOI: 10.3389/fpls.2021.668623


Comparative Transcriptome Analysis Reveals Genetic Mechanisms of Sugarcane Aphid Resistance in Grain Sorghum.

Serba DD, Meng X, Schnable J, Bashir E, Michaud JP, Vara Prasad PV, Perumal R

Published: 21 July 2021 in International journal of molecular sciences
Pubmed ID: 34281180
DOI: 10.3390/ijms22137129


Profiling Alternative 3′ Untranslated Regions in Sorghum using RNA-seq Data.

Tu M, Li Y

Published: 17 November 2020 in Frontiers in genetics
Pubmed ID: 33193635
DOI: 10.3389/fgene.2020.556749


Transcriptome analysis of drought-tolerant sorghum genotype SC56 in response to water stress reveals an oxidative stress defense strategy.

Azzouz-Olden F, Hunt AG, Dinkins R

Published: 19 April 2020 in Molecular biology reports
Pubmed ID: 32303956
DOI: 10.1007/s11033-020-05396-5


Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.

Varoquaux N, Cole B, Gao C, Pierroz G, Baker CR, Patel D, Madera M, Jeffers T, Hollingsworth J, Sievert J, Yoshinaga Y, Owiti JA, Singan VR, DeGraaf S, Xu L, Blow MJ, Harrison MJ, Visel A, Jansson C, Niyogi KK, Hutmacher R, Coleman-Derr D, O'Malley RC, Taylor JW, Dahlberg J, Vogel JP, Lemaux PG, Purdom E

Published: 7 December 2019 in Proceedings of the National Academy of Sciences of the United States of America
Pubmed ID: 31806758
DOI: 10.1073/pnas.1907500116


Common metabolic networks contribute to carbon sink strength of sorghum internodes: implications for bioenergy improvement.

Li Y, Tu M, Feng Y, Wang W, Messing J

Published: 14 December 2019 in Biotechnology for biofuels
Pubmed ID: 31832097
DOI: 10.1186/s13068-019-1612-7


Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes.

Li Y, Wang W, Feng Y, Tu M, Wittich PE, Bate NJ, Messing J

Published: 28 July 2018 in Plant biotechnology journal
Pubmed ID: 30051585
DOI: 10.1111/pbi.12991


Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE.

Fracasso A, Trindade LM, Amaducci S

Published: 23 May 2016 in BMC plant biology
Pubmed ID: 27208977
DOI: 10.1186/s12870-016-0800-x


Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences.

Soneson C, Love MI, Robinson MD

Published: 1 March 2016 in F1000Research
Pubmed ID: 27256815
DOI: 10.12688/f1000research.7563.2