22 Papers


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A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset.

Zhou Y, Kathiresan N, Yu Z, Rivera LF, Yang Y, Thimma M, Manickam K, Chebotarov D, Mauleon R, Chougule K, Wei S, Gao T, Green CD, Zuccolo A, Xie W, Ware D, Zhang J, McNally KL, Wing RA

Published: 26 January 2024 in BMC biology
Pubmed ID: 38273258
DOI: 10.1186/s12915-024-01820-5


Root responses to abiotic stress – a comparative look at root system architecture in maize and sorghum.

Hostetler AN, Morais de Sousa Tinoco S, Sparks EE

Published: 6 October 2023 in Journal of experimental botany
Pubmed ID: 37798135
DOI: 10.1093/jxb/erad390


Hormonal regulation of inflorescence and intercalary meristems in grasses.

Awale P, McSteen P

Published: 23 September 2023 in Current opinion in plant biology
Pubmed ID: 37739867
DOI: 10.1016/j.pbi.2023.102451


ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development.

Hou Q, An X, Ma B, Wu S, Wei X, Yan T, Zhou Y, Zhu T, Xie K, Zhang D, Li Z, Zhao L, Niu C, Long Y, Liu C, Zhao W, Ni F, Li J, Fu D, Yang ZN, Wan X

Published: 28 July 2023 in Molecular plant
Pubmed ID: 37501369
DOI: 10.1016/j.molp.2023.07.010


A leaf-level spectral library to support high throughput plant phenotyping: Predictive accuracy and model transfer.

Wijewardane NK, Zhang H, Yang J, Schnable JC, Schachtman DP, Ge Y

Published: 6 April 2023 in Journal of experimental botany
Pubmed ID: 37018460
DOI: 10.1093/jxb/erad129


Introducing sorghum DREB2 gene in maize (Zea mays L.) to improve drought and salinity tolerance.

Izadi-Darbandi A, Alameldin H, Namjoo N, Ahmad K

Published: 15 March 2023 in Biotechnology and applied biochemistry
Pubmed ID: 36916234
DOI: 10.1002/bab.2458


Cross-species predictive modeling reveals conserved drought responses between maize and sorghum.

Pardo J, Wai CM, Harman M, Nguyen A, Kremling KA, Romay MC, Lepak N, Bauerle TL, Buckler ES, Thompson AM, VanBuren R

Published: 28 February 2023 in Proceedings of the National Academy of Sciences of the United States of America
Pubmed ID: 36848555
DOI: 10.1073/pnas.2216894120


Editorial: Genomic selection and characterization in cereals.

Rashid MAR, Sajjad M, Gul A, Zhao Y

Published: 31 January 2023 in Frontiers in genetics
Pubmed ID: 36712864
DOI: 10.3389/fgene.2022.1092095


Comparative Proteomics Analysis between Maize and Sorghum Uncovers Important Proteins and Metabolic Pathways Mediating Drought Tolerance.

Ali AEE, Husselmann LH, Tabb DL, Ludidi N

Published: 22 January 2023 in Life (Basel, Switzerland)
Pubmed ID: 36676117
DOI: 10.3390/life13010170


OMICS in Fodder Crops: Applications, Challenges, and Prospects.

Kumar P, Singh J, Kaur G, Adunola PM, Biswas A, Bazzer S, Kaur H, Kaur I, Kaur H, Sandhu KS, Vemula S, Kaur B, Singh V, Tseng TM

Published: 11 November 2022 in Current issues in molecular biology
Pubmed ID: 36354681
DOI: 10.3390/cimb44110369


Association mapping across a multitude of traits collected in diverse environments in maize.

Mural RV, Sun G, Grzybowski M, Tross MC, Jin H, Smith C, Newton L, Andorf CM, Woodhouse MR, Thompson AM, Sigmon B, Schnable JC

Published: 24 August 2022 in GigaScience
Pubmed ID: 35997208
DOI: 10.1093/gigascience/giac080


Combining GWAS and TWAS to identify candidate causal genes for tocochromanol levels in maize grain.

Wu D, Li X, Tanaka R, Wood JC, Tibbs-Cortes LE, Magallanes-Lundback M, Bornowski N, Hamilton JP, Vaillancourt B, Diepenbrock CH, Li X, Deason NT, Schoenbaum GR, Yu J, Buell CR, DellaPenna D, Gore MA

Published: 7 June 2022 in Genetics
Pubmed ID: 35666198
DOI: 10.1093/genetics/iyac091


SNP-Based Genome-Wide Association Mapping of Pollen Viability Under Heat Stress in Tropical Zea mays L. Inbred Lines.

Ahmed Z, Khalid M, Ghafoor A, Shah MKN, Raja GK, Rana RM, Mahmood T, Thompson AM

Published: 5 April 2022 in Frontiers in genetics
Pubmed ID: 35368702
DOI: 10.3389/fgene.2022.819849


Genetic Architecture of Grain Yield-Related Traits in Sorghum and Maize.

Baye W, Xie Q, Xie P

Published: 11 March 2022 in International journal of molecular sciences
Pubmed ID: 35269548
DOI: 10.3390/ijms23052405


Conserved co-functional network between maize and Arabidopsis aid in the identification of seed defective genes in maize.

Zhang X, Cui Y, Wang J, Huang Y, Qi Y

Published: 3 March 2021 in Genes & genomics
Pubmed ID: 33651300
DOI: 10.1007/s13258-021-01067-2


Identification and evolution analysis of the JAZ gene family in maize.

Han Y, Luthe D

Published: 12 April 2021 in BMC genomics
Pubmed ID: 33838665
DOI: 10.1186/s12864-021-07522-4


Simultaneous dissection of grain carotenoid levels and kernel color in biparental maize populations with yellow-to-orange grain.

LaPorte MF, Vachev M, Fenn M, Diepenbrock C

Published: 1 February 2022 in G3 (Bethesda, Md.)
Pubmed ID: 35100389
DOI: 10.1093/g3journal/jkac006


Leveraging histone modifications to improve genome annotations.

Mendieta JP, Marand AP, Ricci WA, Zhang X, Schmitz RJ

Published: 28 September 2021 in G3 (Bethesda, Md.)
Pubmed ID: 34568920
DOI: 10.1093/g3journal/jkab263


Chromosome-level genome assembly of a regenerable maize inbred line A188.

Lin G, He C, Zheng J, Koo DH, Le H, Zheng H, Tamang TM, Lin J, Liu Y, Zhao M, Hao Y, McFraland F, Wang B, Qin Y, Tang H, McCarty DR, Wei H, Cho MJ, Park S, Kaeppler H, Kaeppler SM, Liu Y, Springer N, Schnable PS, Wang G, White FF, Liu S

Published: 11 June 2021 in Genome biology
Pubmed ID: 27803309
DOI: 10.1186/s13059-021-02396-x


Consumer Acceptance and Willingness to Pay for Instant Cereal Products With Food-to-Food Fortification in Eldoret, Kenya.

De Groote H, Mugalavai V, Ferruzzi M, Onkware A, Ayua E, Duodu KG, Ndegwa M, Hamaker BR

Published: 17 March 2020 in Food and nutrition bulletin
Pubmed ID: 32174149
DOI: 10.1177/0379572119876848


A leucine-rich repeat-receptor-like kinase gene SbER2-1 from sorghum (Sorghum bicolor L.) confers drought tolerance in maize.

Li H, Han X, Liu X, Zhou M, Ren W, Zhao B, Ju C, Liu Y, Zhao J

Published: 17 October 2019 in BMC genomics
Pubmed ID: 31615416
DOI: 10.1186/s12864-019-6143-x


High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging.

Makanza R, Zaman-Allah M, Cairns JE, Eyre J, Burgueño J, Pacheco Á, Diepenbrock C, Magorokosho C, Tarekegne A, Olsen M, Prasanna BM

Published: 28 June 2018 in Plant methods
Pubmed ID: 29946344
DOI: 10.1186/s13007-018-0317-4