Genetic Variation

Explore the Impact of Variants on Gene Structure

Gene Expression

Access Curated Gene Expression Data

Pathways

Plant Reactome Pathways on Community Reference Genomes

News

Relevant developments in Sorghum research.

Tools

Gene Search, Genome Browser, BLAST

Events

Upcoming Meetings and Conferences

Latest Community News

AG2PI Ag Single Cell Workshop Before AGBT-Ag Conference, Mar 29-30
  • SorghumBase Team
  • 25 October 2024

AG2PI is hosting an Ag Single cell workshop titled, “Enpowering G2P in Agriculture: building a collaborative environment for single-cell applications.”

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Bonus CSI Seminar next Tuesday, Oct. 29 with SorghumBase
  • SorghumBase Team
  • 23 October 2024

Center for Sorghum Improvement seminar: SorghumBase: Building A Comprehensive Resource for the Sorghum Community Tuesday, October 29 11:00 a.m. CT Nick Gladman USDA-ARS Research Molecular Biologist For zoom information check the CSI email or subscribe to the CSI mailing list.

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CSI Seminar Jurandir Magalhaes, Oct 8 at 11 AM CT
  • SorghumBase Team
  • 04 October 2024

The Center for Sorghum Improvement (CSI) is hosting a virtual seminar given by Tesfaye Mengiste, Department of Botany and Plant Pathology at Purdue University, on Tuesday, June 11 at 11 AM CT.

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Recent Research

Comprehensive Characterization of Phospholipase A Genes in Sorghum bicolor: Insights into Growth, Defense, and Stress Response
  • SorghumBase Team
  • 28 October 2024

This study identifies and characterizes 32 phospholipase A (PLA) genes in Sorghum bicolor, revealing their diverse roles in plant growth, defense, and stress response, with significant implications for improving sorghum production in semi-arid regions.

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Distinct Regulatory Mechanisms and Novel Transcriptional Activities of the COMPASS-like Complex in Sorghum
  • SorghumBase Team
  • 21 October 2024

This study identified and characterized the COMPASS-like complex in sorghum, revealing unique ASH2 gene duplications and novel transcriptional activation activity in RbBP5, suggesting distinct regulatory mechanisms for gene expression in sorghum compared to other plants.

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Identifying Genetic Markers for Enhanced Iron and Zinc Concentrations in Sorghum through Genome-Wide Association Studies
  • SorghumBase Team
  • 15 October 2024

This study utilized genetic analysis and genome-wide association studies (GWAS) to identify significant marker-trait associations for iron (Fe) and zinc (Zn) concentrations in sorghum, aiming to improve biofortification and enhance the nutritional quality of this staple crop.

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Tools

Gene Search

Search for genes by id, name, pathway, domain, or ontology term

Genome Browser

Genome browser powered by Ensembl

BLAST

Search by sequence

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